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I've got mine much like you are describing only I have a crank and aux on the car and two aux on the camper, both on the trailer bum off the aux batt on the car via Anderson plug and I've never had an issue. I've also got a 120w panel for longer stays with plans to purchase a second 120w
Edit:I use a ctek 250 dual on the car
I assume you mean that the two camper batteries are connected to the aux under the bonnet via the Ctek?
2006 4.2TDi ex-Telstra Remote area Camper. Patrol Sold after 11 years of ownership Replaced with 2006 OKA NT Expedition Truck. Cummins, Allison & lots of goodies A Nomadic Life (Blog)